ホーム研究紹介メンバー略歴研究業績外部資金アルバム配属希望の3年生へ
HomeResearchMembersCareerPublicationsGrantsAlbumKanazawa UniversityChiba UniversityChubu University
研究業績 (Publications, Публикации) (*: Corresponding Author, #: equally contribution)
43. 2018年10月 *Takahashi H., Tanaka S., Hayashi S., Miyaki S., Takahashi A., Onai S., Fukuyoshi S., and *Miyasaka H., Draft Genome Sequence of the Trebouxiophyceae sp. Strain KSI-1 Isolated from an Island Hot Spring, Microbiol. Resour. Announc. 7(16), e01185-18, 2018 (DOI: 10.1128/MRA.01185-18)[ASMJ]
42. 2018年10月 *Takahashi H., Sakagawa E., Sakakibara I., Machida C., Miyaki S., Takahashi A., Onai S., Fukuyoshi S., Ohta A., Satou K., and *Kanamasa S., Draft Genome Sequence of Yeast Saccharomyces cerevisiae Strain Hm-1 Isolated from Cotton Rosemallow, Microbiol. Resour. Announc. 7(13), e01184-18, 2018(DOI: 10.1128/MRA.01184-18)[ASMJ]
41. 2018年7月 Vial-Pradel S., Keta S., Nomoto M., Luo L., Takahashi H., Suzuki M., Yokoyama Y., Sasabe M., Kojima S., Tada Y., *Machida Y., and *Machida C., Arabidopsis zinc-finger-like protein ASYMMETRIC LEAVES2 (AS2) and two nucleolar proteins maintain gene body DNA methylation in the leaf polarity gene ETTIN (ARF3), Plant Cell Physiol., 59(7), 1385-1397, 2018 (DOI: 10.1093/pcp/pcy031)[PubMed]
40. 2017年9月 Hayashi N., Sasaki S., Takahashi H., Yamashita Y., Naito S., and *Onouchi H., Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest, Nucleic Acids Res., 45(15), 8844-8858, 2017 (DOI: 10.1093/nar/gkx528)[PubMed]
39. 2017年2月 *Maeda R., Tamashiro H., Takano K., Takahashi H., Suzuki H., Saito S., Kojima W., Adachi N., Ura K., Endo T., and Tamura T., TBP-like protein (TLP) disrupts the p53-MDM2 interaction and induces long-lasting p53 activation, J. Biol. Chem., 292(8), 3201-3212, 2017 (DOI: 10.1074/jbc.M116. 763318)[PubMed]
38. 2016年11月 *Miyasaka H., Ogata T., Tanaka S., Ohama T., Kano S., Fujiwara K., Hayashi S., Yamamoto S., Takahashi H., Matsuura H., and Hirata K., Is chloroplastic class IIA aldolase a marine enzyme?, ISME J, 10(11), 2767-2772, 2016 (DOI: 10.1038/ismej.2016.52)[PubMed]
37. 2016年11月 Maruta T., Ogawa T., Tsujimura M., Ikemoto K., Yoshida T., Takahashi H., Yoshimura K., and *Shigeoka S., Loss-of-function of an Arabidopsis NADPH pyrophosphohydrolase, AtNUDX19, impacts on the pyridine nucleotides status and confers photooxidative stress tolerance, Sci. Rep., 6, 37432, 2016 (DOI: 10.1038/srep37432)[PubMed]
36. 2016年7月 Matsumura Y., Ohbayashi I., Takahashi H., Kojima S., Ishibashi N., Keta S., Nakagawa A., Hayashi R., Saez-Vasquez J., Echeverria M., Sugiyama M., Nakamura K., *Machida C., and *Machida Y., A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis, Biol. Open, 5(7), 942-954, 2016 (DOI: 10.1242/bio.019109)[PubMed]
35. 2015年11月 *Machida C., Nakagawa A., Kojima S., Takahashi H., and Machida Y., The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis,Wiley Interdiscip. Rev. Dev. Biol., 4(6), 655-671, 2015 (DOI: 10.1002/wdev.196)[PubMed]
34. 2015年10月 *Takahashi H., Kaniwa N., Saito Y., Sai K., Hamaguchi T., Shirao K., Shimada Y., Matsumura Y., Ohtsu A., Yoshino T., Doi T., Takahashi A., Odaka Y., Okuyama M., Sawada J., Sakamoto H., and Yoshida T., Construction of possible integrated predictive index based on EGFR and ANXA3 polymorphisms for chemotherapy response in fluoropyrimidine-treated Japanese gastric cancer patients using a bioinformatic method, BMC Cancer, 15(1), 718, 2015 (DOI: 10.1186/s12885-015-1721-z)[PubMed]
33. 2015年6月 Noh A. L., Watanabe S., Takahashi H., Naito S., and *Onouchi H., An upstream open reading frame represses expression of a tomato homologue of Arabidopsis ANAC096, a NAC domain transcription factor gene, in a peptide sequence-dependent manner, Plant Biotechnol., 32(2), 157-163, 2015 (DOI: 10.5511/plantbiotechnology.15.0519a)[J-STAGE]
32. 2015年5月 Jo A., Mitani S., Shiba N., Hayashi Y., Hara Y., Takahashi H., Tsukimoto I., Tawa A., Horibe K., Tomizawa D., Taga T., Adachi S., Yoshida T., and Ichikawa H., High expression of EVI1 and MEL1 is a compelling poor prognostic marker of pediatric AML, Leukemia (in press)[PubMed]
31. 2015年3月 Kumasaka M. Y., Yajima I., Iida M., Takahashi H., Inoue Y., Fukushima S., Ihn H., Takeda K., Naito Y., Yoshikawa T., and *Kato M., Correlated expression levels of endothelin receptor B and Plexin C1 in melanoma, Am. J. Cancer Res., 5(3), 1117-1123, 2015 [PubMed]
30. 2015年2月 Ebina I., Takemoto M., Watanabe S., Koyama H., Endo Y., Kimata K., Igarashi T., Murakami K., Kudo R., Osumi A., Noh A. L., Takahashi H., Naito S., and *Onouchi H., Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner, Nucleic Acids Res., 40(3), 1562-1576, 2015 [PubMed]
29. 2014年9月 #Takahashi A., Nakayama R., Ishibashi N., Doi A., Ichinohe R., Ikuyo Y., Takahashi T., Marui S., Yasuhara K., Nakamura T., Sugita S., Sakamoto H., Yoshida T., Hasegawa T., and #*Takahashi H., Analysis of gene expression profiles of soft tissue sarcoma using a combination of knowledge-based filtering with integration of multiple statistics, PLoS ONE, 9(9), e106801, 2014 (DOI: 10.1371/journal.pone.0106801)[PubMed]
28. 2014年8月 *Takahashi H., Sai K., Saito Y., Kaniwa N., Matsumura Y., Hamaguchi T., Shimada Y., Ohtsu A., Yoshino T., Doi T., Okuda H., Ichinohe R., Takahashi A., Doi A., Odaka Y., Okuyama M., Saijo N., Sawada J., Sakamoto H., and Yoshida T., Application of a combination of a knowledge-based algorithm and 2-stage screening to hypothesis-free genomic data on irinotecan-treated patients for identification of a candidate single nucleotide polymorphism related to an adverse effect, PLoS ONE, 9(8), e105160, 2014 (DOI: 10.1371/journal.pone.0105160)[PubMed]
27. 2013年12月 *Takahashi H., Kaniwa N., Saito Y., Sai K., Hamaguchi T., Shirao K., Shimada Y., Matsumura Y., Ohtsu A., Yoshino T., Takahashi A., Odaka Y., Okuyama M., Sawada J., Sakamoto H., and Yoshida T., Identification of a candidate single-nucleotide polymorphism related to chemotherapeutic response through a combination of knowledge-based algorithm and hypothesis-free genomic data, J. Biosci. Bioeng., 116(6), 768-773, 2013 (DOI: 10.1016/j.jbiosc.2013.05.021)[PubMed]
26. 2013年10月 *Takahashi H., Nakayama R., Hayashi S., Nemoto T., Murase Y., Nomura K., Takahashi T., Kubo K., Marui S., Yasuhara K., Nakamura T., Sueo T., Takahashi A., Tsutsumiuchi K., Ohta T., Kawai A., Sugita S., Yamamoto S., Kobayashi T., Honda H., Yoshida T., and Hasegawa T., Macrophage migration inhibitory factor and stearoyl-CoA desaturase 1: Potential prognostic markers for soft tissue sarcomas based on bioinformatics analyses, PLoS ONE, 8(10), e78250, 2013 (DOI:10.1371/journal.pone.0078250)[PubMed]
25. 2013年8月 *Kotooka N., Komatsu A., Takahashi H., Nonaka M., Kawaguchi C., Komoda H., Asaka M., Abe S., Taguchi I., Toyoda S., Nishiyama M., Inoue T., and Node K., Predictive value of high-molecular weight adiponectin in subjects with a higher risk of the development of metabolic syndrome: From a population based 5-year follow-up data, Int. J. Cardiol., 167(3),1068-1070, 2013[PubMed]
24. 2013年5月 Iwasaki M., Takahashi H., Iwakawa H., Nakagawa A., Ishikawa T., Tanaka H., Matsumura Y., Pekker I., Eshed Y., Pradel S. V., Ito T., Watanabe Y., Ueno Y., Fukazawa H., Kojima S., Machida Y., and *Machida C., Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis, Development, 140(9), 1958-1969, 2013[PubMed]
23. 2013年3月 Takahashi H., Iwakawa H., Ishibashi N., Kojima S., Matsumura Y., Prananingrum P., Iwasaki M., Takahashi A., Ikezaki M., Luo L., Kobayashi T., *Machida Y., and *Machida C., Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development, Plant Cell Physiol., 54(3), 418-431, 2013[PubMed]
22. 2013年2月 *Chiba Y., Mineta K., Hirai M. Y., Suzuki Y., Kanaya S., Takahashi H., Onouchi H., Yamaguchi J., and Naito S., Changes in mRNA Stability Associated with Cold Stress in Arabidopsis Cells, Plant Cell Physiol., 54(2), 180-194, 2013[PubMed]
21. 2012年12月 *Takahashi H., Nakagawa A., Kojima S., Takahashi A., Cha B. Y., Woo J. T., Nagai K., Machida Y., and Machida C., Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods, J. Biosci. Bioeng., 114(5), 570-575, 2012[PubMed]
20. 2012年9月 Takahashi H., Takahashi A., Naito S., and *Onouchi H., BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences, and its application to the Arabidopsis thaliana genome, Bioinformatics, 28(17), 2231-2241, 2012[PubMed]
19. 2012年8月 #Nakagawa A., #Takahashi H., Kojima S., Sato N., Ohga K., Cha B. Y., Woo J. T., Nagai K., Horiguchi G., Tsukaya H., Machida Y., and *Machida C., Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana, Plant Mol. Biol., 79(6), 569-581, 2012 (#: co-first authors)[PubMed]
18. 2012年5月 Yajima I., Kumasaka M. Y., Naito Y., Yoshikawa T., Takahashi H., Funasaka Y., Suzuki T., and
*Kato M., Reduced GNG2 expression levels in mouse malignant melanomas and human melanoma cell lines, Am. J. Cancer Res., 2(3), 322-329, 2012[PubMed]
17. 2011年10月 Yoshimura K., Mori T., Yokoyama K., Koike Y., Tanabe N., Sato N., Takahashi H., Maruta T., and
*Shigeoka S., Identification of alternative splicing events regulated by an Arabidopsis
serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array,
Plant Cell Physiol., 52(10), 1786-1805, 2011[PubMed]
16. 2011年8月 Kojima S., Iwasaki M., Takahashi H., Imai T., Matsumura Y., Fleury D., Lijsebettens M. V.,
Machida Y., and *Machida C., ASYMMETRIC LEAVES2 and Elongator, a Histone Acetyltransferase Complex, Mediate the Establishment of Polarity in Leaves of Arabidopsis thaliana, Plant Cell Physiol., 52(8), 1259-1273, 2011[PubMed]
15. 2010年1月 Sano M., Aoyagi K., Takahashi H., Kawamura T., Mabuchi T., Igaki H., Tachimori Y., Kato H.,
Ochiai A., Honda H., Nimura Y., Nagino M., Yoshida T., and *Sasaki H., Forkhead box A1 transcriptional pathway in KRT7-expressing esophageal squamous cell carcinomas with extensive lymph node metastasis, Int. J. Oncol., 36(2), 321-330, 2010[PubMed]
14. 2009年10月 Matsuo N., Mase H., Makino M., Takahashi H., and *Banno H., Identification of ENHANCER OF SHOOT REGENERATION 1-upregulated genes during in vitro shoot regeneration, Plant Biotechnol., 26(4), 385-393, 2009[J-STAGE]
13. 2008年12月 *Takahashi H., Iwakawa H., Nakao S., Ojio T., Morishita R., Morikawa S., Machida Y., Machida C., and Kobayashi T., Knowledge-based Fuzzy Adaptive Resonance Theory and Its Application to the Analysis of Gene Expression in Plants, J.Biosci. Bioeng., 106(6), 587-593, 2008[PubMed]
12. 2008年1月 Kawamura T., Takahashi H., and *Honda H., Proposal of new gene filtering method, BagPART, for gene expression analysis with small sample, J.Biosci. Bioeng., 105(1), 81-84, 2008[PubMed]
11. 2007年7月 Nakayama R., Nemoto T., Takahashi H., Ohta T., Kawai A., Seki K., Yoshida T., Toyama Y.,
*Ichikawa H., and Hasegawa T., Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma, Mod. Pathol., 20(7), 749-759, 2007 [PubMed]
10. 2007年2月 Takahashi H., Murase Y., Kobayashi T., and *Honda H., New cancer diagnosis modeling using boosting and projective adaptive resonance theory with improved reliable index, Biochem. Eng. J.,
33(2), 100-109, 2007[ScienceDirect]
09. 2006年9月 Takahashi H., Nemoto T., Yoshida T., *Honda H., and Hasegawa T., Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method, BMC Bioinformatics, 7:399, 2006[PubMed]
08. 2006年8月 Takahashi H., Aoyagi K., Nakanishi Y., Sasaki H., Yoshida T., and *Honda H., Classification of intramural metastases and lymph node metastases of esophageal cancer from gene expression based on boosting and projective adaptive resonance theory, J.Biosci. Bioeng., 102(1), 46-52, 2006[PubMed]
07. 2006年7月 Takahashi H. and *Honda H., Lymphoma prognostication from expression profiling using a combination method of boosting and projective adaptive resonance theory, J. Chem. Eng. Jpn., 39(7), 767-771, 2006[J-STAGE]
06. 2006年7月 Takahashi H. and *Honda H., Modified signal-to-noise: a new simple and practical gene filtering approach based on the concept of projective adaptive resonance theory (PART) filtering method, Bioinformatics, 22(13), 1662-1664, 2006[PubMed]
05. 2006年3月 Takahashi H. and *Honda H., Prediction of peptide binding to major histocompatibility complex class II molecules through use of boosted fuzzy classifier with SWEEP operator method, J.Biosci.Bioeng., 101(2),137-141, 2006[PubMed]
04. 2005年9月 Takahashi H. and *Honda H., A new reliable cancer diagnosis method using boosted fuzzy classifier with SWEEP operator method, J. Chem. Eng. Jpn., 38(9), 763-773, 2005[J-STAGE]
03. 2005年1月 Takahashi H., Kobayashi T., and *Honda H., Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method, Bioinformatics,
21(2), 179-186, 2005[PubMed]
02. 2004年9月 Takahashi H., Masuda K., Ando T., Kobayashi T., and *Honda H., Prognostic predictor with multiple fuzzy neural models using expression profiles from DNA microarray for metastases of breast cancer, J.Biosci.Bioeng., 98(3),193-199, 2004[PubMed]
01. 2003年9月 Takahashi H., Tomida S., Kobayashi T., and *Honda H., Inference of common genetic network using fuzzy adaptive resonance theory associated matrix method, J.Biosci.Bioeng., 96(2),154-160, 2003[PubMed]
     
 
研究業績 (Publications, Публикации) (*: Corresponding Author, #: equally contribution)
HomeResearchMemberCareerPublicationsGrantsAlbumHaizokuKanazawaChibaChubu